How to find articles, books, conference proceedings, dissertations, protocols, data and citation management tools, and other resources in Molecular and Cell Biology.
Genomes and predicted metabolic pathways for thousands of organisms, together with a suite of software tools for analysis and visualization. Login to a free personal account is required after 10 searches.
Pathway/Genome Databases (PGDBs) are generated by software that predict the metabolic pathways of completely sequenced organisms, predict which genes code for missing enzymes in metabolic pathways, and predict operons. BioCyc also integrates information from other bioinformatics databases, such as protein feature and Gene Ontology information from UniProt. The BioCyc website provides a suite of software tools for database searching and visualization, for omics data analysis, and for comparative genomics and comparative pathway questions.
Database and gene expression pathway analysis software for data derived from 'omics experiments, such as RNA-seq, small RNA-seq, microarrays including miRNA and SNP, metabolomics, proteomics, and small-scale experiments.
Functional annotations relating to biological and chemical interactions, cellular phenotypes, and disease processes are referenced from the scientific literature.
Tools for the analysis and functional characterization of publicly available genomes of plants, fungi, and microbes, as well as environmental metagenomes.
A federally-supported collection of more than 40 databases and analysis tools for research in molecular biology, including Assembly, Basic Local Alignment Search Tool (BLAST), BioProject, BioSample, Gene, Gene Expression Omnibus (GEO), Genome, Nucleotide, Protein, Structure, and the Sequence Read Archive (SRA). NCBI Guide
Protein information for species including human, mouse, rat, yeast, worm, and plant, including links to relevant scientific literature. Human entries include associated disease information.
Provides genomic, phenotypic and population-centric data for invertebrate vectors of human pathogens. Sponsored by NIAID-BRC (National Institute of Allergy and Infectious Diseases Bioinformatics Resource Center).
Genome sequence data for Apis mellifera and three of its pathogens, as well as Bombus terrestris and B. impatiens. The genomes of additional species are being added.
A consortium working to sequence the euchromatic genome of Drosophila melanogaster and to generate and maintain biological annotations of this sequence.
To browse the resource, no login is required. In order to save data and use specialized tools within this HGMD, users must first create a login. Collates genetic mutations that are responsible for human inherited disease. Includes links to relevant references from the scientific literature.
Genetic and molecular biology data for the model higher plant Arabidopsis thaliana.
The Arabidopsis Information Resource (TAIR) is a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. Data available from TAIR includes the complete genome sequence along with gene structure, gene product information, gene expression, DNA and seed stocks, genome maps, genetic and physical markers, publications, and information about the Arabidopsis research community.
Defines the descriptive vocabularies (ontologies) relating to gene function in order to standardize gene functional annotations. Functions are defined with respect to molecular activity, cellular component, and biological process. Formal ontologies have been defined for over 40,000 biological concepts.
